Web Browsing and Query Interfaces

These web pages demonstrate the following OPM browsing and query tools:

1. OPM Schema Browser.
2. OPM Query Construction Tool.
3. OPM Update Tool (optional availability).
4. Outline Schema and Data browser.

Platforms

Using Netscape 3.x and 4.x the following platforms tested successfully: Solaris, Linux, SGI, DEC Alpha, and NT. SunOS 4.1.x Netscape 2.x crashes with color monitors. Netscape 3.x crashes with a large schema such as the Human Genome Database or the multi-query system using it.

Multidatabase System Prototypes

(This system is currently offline.)

• Molecular Biology Database Federation

  See also The Database Directory for Molecular Biology Databases

• Collaborative Management Environment (CME) Multidatabase System

  See also The Database Directory for the CME System

Genome Databases

• Genome Database (GDB)
• Genome Sequence Database (GSDB)
• 3DB for Biomolecules (PDB)
• German Genome Resource Center's Primary Database
  See also Customized Forms constructed with OPM Web Tools

  Genline

Biology Databases

Systematics Collections (ASC) Reference Model

NABIR

RZPD (LBNL copy)

SRS Example

Schema for a Shotgun Sequencing LIMS

Museum of Vertebrate Zoology, UC Berkeley

Electronic Notebook Databases

• ALS Lab Notebook (als)
• ALS Electronic Notebook (en)

Physics Databases

--- Schema Browsing Only

• STAR Hierarchical Database - BNL Version
• STAR Hierarchical Database - LBNL Version
• rhic_mc
• rhic_mc_oo
• rhic_mc_oo_2

Collaborative Management Environment Databases

AMES Laboratory

Integrated Budget Information Management System

Lawrence Berkeley National Laboratory

MARS system

Oak Ridge National Laboratory

Test Databases

• University Test Sybase
• University Test Oracle
• University Test Remote Oracle
• Simple HQS Test

Installation/Usage Notes for public release version.

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Contact: E_Szeto@lbl.gov